# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_gcm/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/gcm.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/gcm.fasta (Sat Feb 12 15:50:50 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.257 C 0.246 G 0.231 T 0.267


MOTIF ATGCGGGY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGCGGGY   RCCCGCAT         66          1   3.7e-021   2.5e-017
#         ATGCGGGC   GCCCGCAT         36          0   3.7e-012   2.5e-008
#         ATGCGGGT   ACCCGCAT         30          1   6.3e-009   4.1e-005

letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 2.5e-017
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.529412 0.000000 0.470588


MOTIF AAATTGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATTGAA   TTCAATTT          6          0   1.5e-002   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACAACAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAACAA   TTGTTGTT          6          0   1.5e-002   9.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGCGGGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGCGGGC   GCCCGCAG          6          0   1.5e-002   9.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.3e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAACCAGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACCAGC   GCTGGTTT          4          0   6.2e-002   3.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.28 seconds