# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_fru/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/fru.fasta
#   positives: 65 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/fru.fasta (Sat Feb 12 15:50:50 EST 2022)
#   negatives: 65 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:13 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.336 C 0.174 G 0.152 T 0.337


MOTIF AAAAAATA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAATA   TATTTTTT         11          3   2.2e-002   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 3.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TCCTAAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCCTAAAA   TTTTAGGA          4          0   6.0e-002   9.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 9.9e+001
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAAGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAGAA   TTCTTTTT          3          0   1.2e-001   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATAAATT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATAAATT   AATTTATT          3          0   1.2e-001   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATAAAATA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAAAATA   TATTTTAT          3          0   1.2e-001   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.40 seconds