# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_fd64A/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/fd64A.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/fd64A.fasta (Sat Feb 12 15:50:49 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.293 C 0.205 G 0.218 T 0.284


MOTIF TGTAAAYA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGTAAAYA   TRTTTACA         19          0   1.3e-006   8.4e-003
#         TGTAAATA   TATTTACA         11          0   4.4e-004   2.7e+000
#         TGTAAACA   TGTTTACA          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 8.4e-003
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.400000 0.000000 0.600000
1.000000 0.000000 0.000000 0.000000


MOTIF AATRTTTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATRTTTG   CAAAYATT         15          0   2.5e-005   1.5e-001
#         AATATTTG   CAAATATT          8          0   3.7e-003   2.3e+001
#         AATGTTTG   CAAACATT          7          0   7.5e-003   4.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.5e-001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.533333 0.000000 0.466667 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TAAACAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAACAAA   TTTGTTTA          9          0   1.8e-003   1.1e+001
#         TAAACAAA   TTTGTTTA          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.1e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TAAGCAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAGCAAA   TTTGCTTA          6          0   1.5e-002   9.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.2e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACAAACA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAAACA   TGTTTGTT         12          3   1.6e-002   9.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 9.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.97 seconds