# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_fd3F/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/fd3F.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/fd3F.fasta (Sat Feb 12 15:50:49 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.348 C 0.158 G 0.152 T 0.342


MOTIF AATATTTK DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATTTK   MAAATATT         14          0   5.1e-005   3.0e-001
#         AATATTTT   AAAATATT          8          0   3.7e-003   2.2e+001
#         AATATTTG   CAAATATT          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 3.0e-001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.428571 0.571429


MOTIF AAAACAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACAAA   TTTGTTTT          8          0   3.7e-003   2.2e+001
#         AAAACAAA   TTTGTTTT          8          0   3.7e-003   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATAAATAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAAATAT   ATATTTAT          7          0   7.5e-003   4.4e+001
#         ATAAATAT   ATATTTAT          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAACCCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACCCA   TGGGTTTT          6          0   1.5e-002   8.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAATTTG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATTTG   CAAATTTT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.77 seconds