# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_fd102C/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/fd102C.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/fd102C.fasta (Sat Feb 12 15:50:49 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.310 C 0.192 G 0.190 T 0.308


MOTIF AAATATTK DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATATTK   MAATATTT         24          2   3.2e-006   2.0e-002
#         AAATATTG   CAATATTT         12          1   1.5e-003   9.6e+000
#         AAATATTT   AAATATTT         12          1   1.5e-003   9.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.0e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.500000 0.500000


MOTIF ATGCAAAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGCAAAT   ATTTGCAT          7          0   7.5e-003   4.6e+001
#         ATGCAAAT   ATTTGCAT          7          0   7.5e-003   4.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.6e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF GTAAACAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTAAACAA   TTGTTTAC          7          0   7.5e-003   4.6e+001
#         GTAAACAA   TTGTTTAC          7          0   7.5e-003   4.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.6e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATCATT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATCATT   AATGATTT          6          0   1.5e-002   9.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAAACTG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAACTG   CAGTTTTT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.92 seconds