# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_exex/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/exex.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/exex.fasta (Sat Feb 12 15:50:49 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.325 C 0.172 G 0.180 T 0.322


MOTIF TCTTATCR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCTTATCR   YGATAAGA         15          0   2.5e-005   1.5e-001
#         TCTTATCG   CGATAAGA          8          0   3.7e-003   2.2e+001
#         TCTTATCA   TGATAAGA          7          0   7.5e-003   4.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.5e-001
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.466667 0.000000 0.533333 0.000000


MOTIF AACAATTA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAATTA   TAATTGTT          9          1   1.0e-002   6.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 6.1e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTAATTA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTAATTA   TAATTAAT          9          1   1.0e-002   6.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 6.0e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TAATTAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAATTAAA   TTTAATTA          8          1   1.9e-002   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.1e+002
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATAACAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATAACAT   ATGTTATT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.25 seconds