# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_dmrt99B/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/dmrt99B.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/dmrt99B.fasta (Sat Feb 12 15:50:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.373 C 0.133 G 0.126 T 0.367


MOTIF ATTTGAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTGAAA   TTTCAAAT          8          0   3.7e-003   1.9e+001
#         ATTTGAAA   TTTCAAAT          8          0   3.7e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CATTTATA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATTTATA   TATAAATG          6          0   1.5e-002   8.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.0e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATAAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATAAAA   TTTTATTT         13          4   2.3e-002   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATATTTAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATTTAC   GTAAATAT          5          0   3.1e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAAGAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAGAT   ATCTTTTT          6          1   6.1e-002   3.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.54 seconds