# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_dm/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/dm.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/dm.fasta (Sat Feb 12 15:50:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.268 C 0.236 G 0.231 T 0.264


MOTIF ACAYGTGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAYGTGC   GCACRTGT         34          0   1.7e-011   1.1e-007
#         ACACGTGC   GCACGTGT         26          0   7.5e-009   4.9e-005
#         ACATGTGC   GCACATGT          8          0   3.7e-003   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 1.1e-007
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.764706 0.000000 0.235294
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGTCACAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTCACAC   GTGTGACC         12          0   2.1e-004   1.4e+000
#         GGTCACAC   GTGTGACC         12          0   2.1e-004   1.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.4e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TATCGATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATCGATA   TATCGATA          9          0   1.8e-003   1.1e+001
#         TATCGATA   TATCGATA          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.1e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACAAAAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAAAAC   GTTTTGTT          6          0   1.5e-002   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GTAAACAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTAAACAA   TTGTTTAC          6          0   1.5e-002   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.4e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 2.34 seconds