# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_dl/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/dl.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/dl.fasta (Sat Feb 12 15:50:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.230 C 0.259 G 0.247 T 0.264


MOTIF CGCTCTCY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCTCTCY   RGAGAGCG         43          7   2.6e-008   1.5e-004
#         CGCTCTCT   AGAGAGCG         34          6   1.8e-006   1.0e-002
#         CGCTCTCC   GGAGAGCG         10          1   5.4e-003   3.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 1.5e-004
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.204082 0.000000 0.795918


MOTIF AAAGAGMG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGAGMG   CKCTCTTT         33          9   7.3e-005   4.1e-001
#         AAAGAGCG   CGCTCTTT         13          2   3.3e-003   1.8e+001
#         AAAGAGAG   CTCTCTTT         20          7   8.0e-003   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 4.1e-001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.617647 0.382353 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGTGAGCG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGAGCG   CGCTCACT          5          0   3.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CACTCGCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACTCGCA   TGCGAGTG          5          0   3.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAGGGAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGGAG   CTCCCTCT         10          3   4.4e-002   2.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.58 seconds