# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_da/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/da.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/da.fasta (Sat Feb 12 15:50:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.252 C 0.252 G 0.257 T 0.238


MOTIF ARCAGCTG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ARCAGCTG   CAGCTGYT         22          1   1.8e-006   1.2e-002
#         AACAGCTG   CAGCTGTT         12          0   2.1e-004   1.4e+000
#         AGCAGCTG   CAGCTGCT         12          1   1.5e-003   9.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.2e-002
1.000000 0.000000 0.000000 0.000000
0.478261 0.000000 0.521739 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CAGCTGGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCTGGC   GCCAGCTG          7          0   7.5e-003   4.7e+001
#         CAGCTGGC   GCCAGCTG          7          0   7.5e-003   4.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.7e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCTCGCAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCTCGCAC   GTGCGAGC          7          0   7.5e-003   4.7e+001
#         GCTCGCAC   GTGCGAGC          7          0   7.5e-003   4.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.7e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGATGGCG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGATGGCG   CGCCATCT          6          0   1.5e-002   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GAAAGAGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAAGAGA   TCTCTTTC          6          0   1.5e-002   9.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.3e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.25 seconds