# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_cwo/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/cwo.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/cwo.fasta (Sat Feb 12 15:50:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.255 C 0.229 G 0.242 T 0.274


MOTIF CACGTGMY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGTGMY   RKCACGTG         55          2   5.1e-016   3.3e-012
#         CACGTGCT   AGCACGTG         28          1   2.6e-008   1.7e-004
#         CACGTGAC   GTCACGTG         21          1   3.7e-006   2.4e-002
#         CACGTGAT   ATCACGTG         11          0   4.4e-004   2.8e+000
#         CACGTGCC   GGCACGTG         10          1   5.4e-003   3.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 3.3e-012
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.454545 0.545455 0.000000 0.000000
0.000000 0.454545 0.000000 0.545455


MOTIF AACGTGAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACGTGAC   GTCACGTT          8          0   3.7e-003   2.3e+001
#         AACGTGAC   GTCACGTT          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CACGTGCG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGTGCG   CGCACGTG          6          0   1.5e-002   9.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.3e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GCTGATAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCTGATAA   TTATCAGC          6          0   1.5e-002   9.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.3e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAACAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAACAA   TTGTTTTT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.32 seconds