# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_crp/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/crp.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/crp.fasta (Sat Feb 12 15:50:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.273 C 0.225 G 0.221 T 0.282


MOTIF CAGCTGWY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCTGWY   RWCAGCTG        105          0   2.1e-038   1.3e-034
#         CAGCTGTT   AACAGCTG         78          0   2.6e-027   1.6e-023
#         CAGCTGAT   ATCAGCTG         52          0   1.1e-017   6.9e-014
#         CAGCTGAC   GTCAGCTG         19          0   1.3e-006   8.0e-003
#         CAGCTGTC   GACAGCTG         11          0   4.4e-004   2.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 111 E= 1.3e-034
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.450450 0.000000 0.000000 0.549550
0.000000 0.144144 0.000000 0.855856


MOTIF ATCGATAD DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCGATAD   HTATCGAT         21          0   3.1e-007   1.7e-003
#         ATCGATAA   TTATCGAT         13          0   1.0e-004   5.6e-001
#         ATCGATAG   CTATCGAT         11          0   4.4e-004   2.4e+000
#         ATCGATAT   ATATCGAT          7          0   7.5e-003   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.7e-003
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.391304 0.000000 0.391304 0.217391


MOTIF AGCCCTGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCCTGG   CCAGGGCT          7          0   7.5e-003   3.9e+001
#         AGCCCTGG   CCAGGGCT          7          0   7.5e-003   3.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGTGTGAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGTGAC   GTCACACT          6          0   1.5e-002   7.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATCTGGCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCTGGCA   TGCCAGAT          6          0   1.5e-002   7.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 2.23 seconds