# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_cg/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/cg.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/cg.fasta (Sat Feb 12 15:50:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:59 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.265 C 0.237 G 0.223 T 0.275


MOTIF ACDCACAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACDCACAC   GTGTGHGT        104         48   3.5e-008   1.8e-004
#         ACACACAC   GTGTGTGT         75         41   2.2e-004   1.2e+000
#         ACGCACAC   GTGTGCGT         34         11   2.3e-004   1.2e+000
#         ACTCACAC   GTGTGAGT         18          5   4.5e-003   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 147 E= 1.8e-004
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.653061 0.000000 0.231293 0.115646
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACASATAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACASATAC   GTATSTGT         22          2   1.2e-005   6.0e-002
#         ACACATAC   GTATGTGT         15          2   1.0e-003   5.0e+000
#         ACAGATAC   GTATCTGT          9          0   1.8e-003   9.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 6.0e-002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.535714 0.464286 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CATACATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATACATA   TATGTATG          9          0   1.8e-003   8.9e+000
#         CATACATA   TATGTATG          9          0   1.8e-003   8.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 8.9e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACACTGGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACTGGC   GCCAGTGT          5          0   3.1e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AACAAAGT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAAAGT   ACTTTGTT          4          0   6.2e-002   3.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.22 seconds