# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_caup/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/caup.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/caup.fasta (Sat Feb 12 15:50:42 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.294 C 0.204 G 0.199 T 0.303


MOTIF TAAATAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAATAAA   TTTATTTA          8          0   3.7e-003   2.4e+001
#         TAAATAAA   TTTATTTA          8          0   3.7e-003   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.4e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATATTTAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATTTAC   GTAAATAT          7          0   7.5e-003   4.8e+001
#         ATATTTAC   GTAAATAT          7          0   7.5e-003   4.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGCAAACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGCAAACA   TGTTTGCC          6          0   1.5e-002   9.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.7e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTAAACAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTAAACAA   TTGTTTAC          6          0   1.5e-002   9.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.7e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAAACAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAAACAA   TTGTTTGT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.59 seconds