# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_cad/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/cad.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/cad.fasta (Sat Feb 12 15:50:42 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.281 C 0.230 G 0.224 T 0.264


MOTIF GYCATAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GYCATAAA   TTTATGRC         60          0   1.5e-020   9.7e-017
#         GCCATAAA   TTTATGGC         40          0   1.7e-013   1.0e-009
#         GTCATAAA   TTTATGAC         20          0   6.4e-007   4.0e-003

letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 9.7e-017
0.000000 0.000000 1.000000 0.000000
0.000000 0.677419 0.000000 0.322581
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF MTCATAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    MTCATAAA   TTTATGAK         19          0   1.3e-006   8.0e-003
#         ATCATAAA   TTTATGAT         13          0   1.0e-004   6.2e-001
#         CTCATAAA   TTTATGAG          7          0   7.5e-003   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 8.0e-003
0.650000 0.350000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCAATAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCAATAAA   TTTATTGC         14          1   4.2e-004   2.4e+000
#         GCAATAAA   TTTATTGC         14          1   4.2e-004   2.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.4e+000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCCATAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCATAAA   TTTATGGG          9          1   1.0e-002   5.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAGTTTG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGTTTG   CAAACTGT          6          0   1.5e-002   8.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.80 seconds