# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_brk/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/brk.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/brk.fasta (Sat Feb 12 15:50:42 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:56 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.336 C 0.170 G 0.156 T 0.338


MOTIF GAAATTAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAATTAA   TTAATTTC          7          0   7.5e-003   4.4e+001
#         GAAATTAA   TTAATTTC          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.4e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TATTTAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATTTAAA   TTTAAATA          7          0   7.5e-003   4.4e+001
#         TATTTAAA   TTTAAATA          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.4e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATAAACAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAAACAA   TTGTTTAT          6          0   1.5e-002   8.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCCAAAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCAAAAA   TTTTTGGC          6          0   1.5e-002   8.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.8e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAAAAAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAAAAAC   GTTTTTGT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.43 seconds