# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_bigmax/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/bigmax.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/bigmax.fasta (Sat Feb 12 15:50:42 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.282 C 0.223 G 0.214 T 0.281


MOTIF TAACCTMA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAACCTMA   TKAGGTTA         72          0   5.3e-025   3.4e-021
#         TAACCTCA   TGAGGTTA         59          0   3.6e-020   2.3e-016
#         TAACCTAA   TTAGGTTA         13          0   1.0e-004   6.7e-001

letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 3.4e-021
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.175676 0.824324 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACATAACC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACATAACC   GGTTATGT         12          0   2.1e-004   1.3e+000
#         ACATAACC   GGTTATGT         12          0   2.1e-004   1.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.3e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACCTAACC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCTAACC   GGTTAGGT          6          0   1.5e-002   9.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAACAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAACAA   TTGTTTTT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAACACA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACACA   TGTGTTTT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.35 seconds