# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_achi/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/achi.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/achi.fasta (Sat Feb 12 15:50:41 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:56:00 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.318 C 0.185 G 0.190 T 0.308


MOTIF ATCGATAR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCGATAR   YTATCGAT         17          0   5.8e-006   3.5e-002
#         ATCGATAG   CTATCGAT         10          0   8.9e-004   5.5e+000
#         ATCGATAA   TTATCGAT          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.5e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.388889 0.000000 0.611111 0.000000


MOTIF CTGTCAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGTCAAA   TTTGACAG          9          0   1.8e-003   1.1e+001
#         CTGTCAAA   TTTGACAG          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGCGTTGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCGTTGC   GCAACGCT          6          0   1.5e-002   9.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGTGACAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGACAG   CTGTCACT          6          0   1.5e-002   9.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.0e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAATATAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATATAC   GTATATTT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.21 seconds