# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_ac/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/ac.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/ac.fasta (Sat Feb 12 15:50:41 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.253 C 0.244 G 0.245 T 0.258


MOTIF GCAGSTGY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCAGSTGY   RCASCTGC         45          1   8.3e-014   5.4e-010
#         GCAGCTGT   ACAGCTGC         20          1   7.3e-006   4.8e-002
#         GCAGCTGC   GCAGCTGC         10          0   8.9e-004   5.8e+000
#         GCAGGTGC   GCACCTGC          8          0   3.7e-003   2.4e+001
#         GCAGGTGT   ACACCTGC          7          0   7.5e-003   4.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 5.4e-010
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.666667 0.333333 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.400000 0.000000 0.600000


MOTIF AACAGGTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAGGTG   CACCTGTT          8          0   3.7e-003   2.3e+001
#         AACAGGTG   CACCTGTT          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CACCTGTC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACCTGTC   GACAGGTG          6          0   1.5e-002   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.4e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAAGGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAGGA   TCCTTTTT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGCAGCTG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCAGCTG   CAGCTGCT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.42 seconds