# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_ab/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/ab.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/ab.fasta (Sat Feb 12 15:50:39 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n08.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:56 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.281 C 0.221 G 0.220 T 0.279


MOTIF AAAATTTC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATTTC   GAAATTTT          5          0   3.1e-002   2.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACTGCTTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTGCTTG   CAAGCAGT          5          0   3.1e-002   2.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.1e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAATTCAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATTCAA   TTGAATTT          4          0   6.2e-002   4.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATTGTGT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTGTGT   ACACAATT          4          0   6.2e-002   4.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AGATACGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGATACGA   TCGTATCT          4          0   6.2e-002   4.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.1e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.87 seconds