# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Xbp1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Xbp1.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Xbp1.fasta (Sat Feb 12 15:50:55 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.305 C 0.202 G 0.196 T 0.296


MOTIF AGRTGGCG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGRTGGCG   CGCCAYCT         22          0   1.5e-007   9.6e-004
#         AGATGGCG   CGCCATCT         12          0   2.1e-004   1.4e+000
#         AGGTGGCG   CGCCACCT         10          0   8.9e-004   5.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 9.6e-004
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.545455 0.000000 0.454545 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF MCACGTCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    MCACGTCA   TGACGTGK         19          0   1.3e-006   8.5e-003
#         ACACGTCA   TGACGTGT         10          0   8.9e-004   5.7e+000
#         CCACGTCA   TGACGTGG          9          0   1.8e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 8.5e-003
0.526316 0.473684 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATTATT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATTATT   AATAATTT          6          0   1.5e-002   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATCGATAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCGATAA   TTATCGAT          6          0   1.5e-002   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATCGATAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCGATAG   CTATCGAT          6          1   6.1e-002   3.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.8e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.77 seconds