# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Suvar205/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Suvar205.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Suvar205.fasta (Sat Feb 12 15:50:54 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.266 C 0.220 G 0.230 T 0.284


MOTIF AGGTGGTC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGTGGTC   GACCACCT          5          0   3.1e-002   2.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.1e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAACAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACAAA   TTTGTTTT          4          0   6.2e-002   4.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAGATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGATA   TATCTTTT          4          0   6.2e-002   4.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTATAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTATAAA   TTTATAGT          4          0   6.2e-002   4.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGCAGTGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCAGTGC   GCACTGCT          4          0   6.2e-002   4.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.93 seconds