# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Sp1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Sp1.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Sp1.fasta (Sat Feb 12 15:50:54 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.361 C 0.147 G 0.145 T 0.347


MOTIF ATTTTATA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTTATA   TATAAAAT         12          2   5.9e-003   3.3e+001
#         ATTTTATA   TATAAAAT         12          2   5.9e-003   3.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATACAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATACAAA   TTTGTATT          6          0   1.5e-002   8.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.5e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTTAAAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTAAAT   ATTTAAAT          6          0   1.5e-002   8.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF TTATATAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTATATAA   TTATATAA          6          0   1.5e-002   8.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.4e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAAGGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAGGG   CCCTTTTT          5          0   3.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.37 seconds