# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Smox/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Smox.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Smox.fasta (Sat Feb 12 15:50:54 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.358 C 0.146 G 0.138 T 0.358


MOTIF CATTTAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATTTAAA   TTTAAATG          9          1   1.0e-002   5.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.7e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAATGTT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATGTT   AACATTTT          6          0   1.5e-002   8.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.5e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATAAATAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAAATAA   TTATTTAT          6          0   1.5e-002   8.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAGATA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGATA   TATCTTTT          5          0   3.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTTAAGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTAAGA   TCTTAAAT          5          0   3.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.61 seconds