# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_OdsH/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/OdsH.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/OdsH.fasta (Sat Feb 12 15:50:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.351 C 0.145 G 0.146 T 0.358


MOTIF AAAATGTT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATGTT   AACATTTT          7          0   7.5e-003   4.3e+001
#         AAAATGTT   AACATTTT          7          0   7.5e-003   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATTTTGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTTGAG   CTCAAAAT          6          0   1.5e-002   8.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TAATAATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAATAATA   TATTATTA          6          0   1.5e-002   8.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.7e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TCATTAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCATTAAA   TTTAATGA          6          0   1.5e-002   8.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.6e+001
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATATCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATATCA   TGATATTT          5          0   3.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.42 seconds