# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Nf-YC/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Nf-YC.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Nf-YC.fasta (Sat Feb 12 15:50:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:56 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.242 C 0.262 G 0.259 T 0.237


MOTIF AGAGAGAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGAGAG   CTCTCTCT         12          1   1.5e-003   1.0e+001
#         AGAGAGAG   CTCTCTCT         12          1   1.5e-003   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.0e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATTGGCTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTGGCTG   CAGCCAAT          8          0   3.7e-003   2.4e+001
#         ATTGGCTG   CAGCCAAT          8          0   3.7e-003   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCATTGGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCATTGGC   GCCAATGG          7          0   7.5e-003   4.8e+001
#         CCATTGGC   GCCAATGG          7          0   7.5e-003   4.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGGGTGGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGGGTGGA   TCCACCCC          6          0   1.5e-002   9.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.7e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TCAACCAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCAACCAA   TTGGTTGA          6          0   1.5e-002   9.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.7e+001
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.26 seconds