# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Nf-YB/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Nf-YB.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Nf-YB.fasta (Sat Feb 12 15:50:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.246 C 0.249 G 0.253 T 0.251


MOTIF ACCAATCR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCAATCR   YGATTGGT         15          0   2.5e-005   1.6e-001
#         ACCAATCG   CGATTGGT          8          0   3.7e-003   2.4e+001
#         ACCAATCA   TGATTGGT          7          0   7.5e-003   4.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.6e-001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.466667 0.000000 0.533333 0.000000


MOTIF GCCAACCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCAACCA   TGGTTGGC         10          0   8.9e-004   5.7e+000
#         GCCAACCA   TGGTTGGC         10          0   8.9e-004   5.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 5.7e+000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTGGCTG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTGGCTG   CAGCCAAT         12          1   1.5e-003   9.7e+000
#         ATTGGCTG   CAGCCAAT         12          1   1.5e-003   9.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 9.7e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCAATGGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAATGGG   CCCATTGG          8          0   3.7e-003   2.3e+001
#         CCAATGGG   CCCATTGG          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.3e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CAAAATGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAAAATGG   CCATTTTG          7          0   7.5e-003   4.7e+001
#         CAAAATGG   CCATTTTG          7          0   7.5e-003   4.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.7e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.83 seconds