# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Neu2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Neu2.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Neu2.fasta (Sat Feb 12 15:50:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.264 C 0.240 G 0.226 T 0.271


MOTIF ACCACCAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCACCAA   TTGGTGGT         10          0   8.9e-004   6.1e+000
#         ACCACCAA   TTGGTGGT         10          0   8.9e-004   6.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 6.1e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGTGGTAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGGTAA   TTACCACT          6          0   1.5e-002   1.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.0e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATATCG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATATCG   CGATATTT          4          0   6.2e-002   4.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AATTAGTG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTAGTG   CACTAATT          4          0   6.2e-002   4.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACCAAATG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCAAATG   CATTTGGT          4          0   6.2e-002   4.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 2.04 seconds