# DREME 5.3.3 # command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_NC2β/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/NC2β.fasta # positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/NC2β.fasta (Sat Feb 12 15:50:52 EST 2022) # negatives: 250 from shuffled positives # host: c23n04.farnam.hpc.yale.internal # when: Sat Feb 12 15:55:56 EST 2022 MEME version 5.3.3 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.296 C 0.209 G 0.202 T 0.293 MOTIF CAGTGTGA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CAGTGTGA TCACACTG 8 0 3.7e-003 2.5e+001 # CAGTGTGA TCACACTG 8 0 3.7e-003 2.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.5e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ACAAATAT DREME-2 # Word RC Word Pos Neg P-value E-value # BEST ACAAATAT ATATTTGT 6 0 1.5e-002 1.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.0e+002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 MOTIF AAAAATAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AAAAATAA TTATTTTT 8 1 1.9e-002 1.2e+002 letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.2e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAAATACC DREME-4 # Word RC Word Pos Neg P-value E-value # BEST AAAATACC GGTATTTT 5 0 3.1e-002 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF AAATCAAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST AAATCAAA TTTGATTT 5 0 3.1e-002 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: target motif count reached # Running time: 1.44 seconds