# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_N/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/N.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/N.fasta (Sat Feb 12 15:50:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.293 C 0.224 G 0.211 T 0.272


MOTIF AAGTATGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGTATGC   GCATACTT         22          0   1.5e-007   9.3e-004
#         AAGTATGC   GCATACTT         22          0   1.5e-007   9.3e-004

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 9.3e-004
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GTTGCATA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTTGCATA   TATGCAAC          7          0   7.5e-003   4.7e+001
#         GTTGCATA   TATGCAAC          7          0   7.5e-003   4.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.7e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACACACAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACACAC   GTGTGTGT         13          3   9.7e-003   6.0e+001
#         ACACACAC   GTGTGTGT         13          3   9.7e-003   6.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 6.0e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCCAAAAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCAAAAG   CTTTTGGG          6          0   1.5e-002   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAATATG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATATG   CATATTTT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.87 seconds