# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Mnt/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Mnt.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Mnt.fasta (Sat Feb 12 15:50:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.255 C 0.234 G 0.248 T 0.262


MOTIF ACAYGTGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAYGTGC   GCACRTGT         25          0   1.6e-008   1.0e-004
#         ACACGTGC   GCACGTGT         14          0   5.1e-005   3.3e-001
#         ACATGTGC   GCACATGT         11          0   4.4e-004   2.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.0e-004
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.560000 0.000000 0.440000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GTTATCGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTTATCGA   TCGATAAC         10          0   8.9e-004   5.7e+000
#         GTTATCGA   TCGATAAC         10          0   8.9e-004   5.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 5.7e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CACATGGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACATGGC   GCCATGTG          7          0   7.5e-003   4.8e+001
#         CACATGGC   GCCATGTG          7          0   7.5e-003   4.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.8e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATACC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATACC   GGTATTTT          6          0   1.5e-002   9.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.5e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAGAAGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGAAGAA   TTCTTCTT          6          0   1.5e-002   9.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.5e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.86 seconds