# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Max/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Max.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Max.fasta (Sat Feb 12 15:50:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.299 C 0.201 G 0.209 T 0.292


MOTIF ACACGTGS DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACGTGS   SCACGTGT         21          0   3.1e-007   2.0e-003
#         ACACGTGC   GCACGTGT         14          0   5.1e-005   3.2e-001
#         ACACGTGG   CCACGTGT          7          0   7.5e-003   4.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.0e-003
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.666667 0.333333 0.000000


MOTIF ATCGATAR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCGATAR   YTATCGAT         16          0   1.2e-005   7.4e-002
#         ATCGATAA   TTATCGAT         11          0   4.4e-004   2.7e+000
#         ATCGATAG   CTATCGAT          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 7.4e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.588235 0.000000 0.411765 0.000000


MOTIF AAAAATAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAATAC   GTATTTTT          8          0   3.7e-003   2.3e+001
#         AAAAATAC   GTATTTTT          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAATTTCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATTTCA   TGAAATTT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAAGAAGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAGAAGA   TCTTCTTC          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 2.47 seconds