# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_MESR4/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/MESR4.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/MESR4.fasta (Sat Feb 12 15:50:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.238 C 0.246 G 0.258 T 0.258


MOTIF CCAGCGGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAGCGGC   GCCGCTGG          5          0   3.1e-002   2.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.1e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGAGCACC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGAGCACC   GGTGCTCC          5          0   3.1e-002   2.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.1e+002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATATA   TATATTTT          4          0   6.2e-002   4.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATGCCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATGCCA   TGGCATTT          4          0   6.2e-002   4.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAGCAGAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCAGAG   CTCTGCTG          4          0   6.2e-002   4.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.33 seconds