# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Jra/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Jra.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Jra.fasta (Sat Feb 12 15:50:51 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.282 C 0.217 G 0.214 T 0.287


MOTIF RTGAGTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTGAGTCA   TGACTCAY         21          0   3.1e-007   2.0e-003
#         GTGAGTCA   TGACTCAC         12          0   2.1e-004   1.4e+000
#         ATGAGTCA   TGACTCAT          9          0   1.8e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.0e-003
0.428571 0.000000 0.571429 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TTATTAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTATTAAA   TTTAATAA          6          0   1.5e-002   9.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.8e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TAAATAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAATAAA   TTTATTTA          5          0   3.1e-002   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CACACACA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACACACA   TGTGTGTG          8          2   5.3e-002   3.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 3.4e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAAGAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAGAG   CTCTTTTT          4          0   6.2e-002   3.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.92 seconds