# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Hey/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Hey.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Hey.fasta (Sat Feb 12 15:50:50 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.242 C 0.265 G 0.263 T 0.230


MOTIF CACGTGNC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGTGNC   GNCACGTG         66          3   9.8e-019   6.3e-015
#         CACGTGCC   GGCACGTG         32          1   1.5e-009   9.4e-006
#         CACGTGTC   GACACGTG         32          2   1.4e-008   8.7e-005
#         CACGTGGC   GCCACGTG         18          0   2.8e-006   1.8e-002
#         CACGTGAC   GTCACGTG         11          1   2.9e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 6.3e-015
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.100000 0.328571 0.200000 0.371429
0.000000 1.000000 0.000000 0.000000


MOTIF CGATGGCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGATGGCA   TGCCATCG          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGCGTGCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCGTGCC   GGCACGCG          6          1   6.1e-002   3.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.7e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AATGAAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATGAAAA   TTTTCATT          4          0   6.2e-002   3.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATTAAAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTAAAT   ATTTAATT          4          0   6.2e-002   3.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.27 seconds