# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_HLH106/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/HLH106.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/HLH106.fasta (Sat Feb 12 15:50:50 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.359 C 0.141 G 0.134 T 0.366


MOTIF AAATGTTA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATGTTA   TAACATTT          7          0   7.5e-003   4.1e+001
#         AAATGTTA   TAACATTT          7          0   7.5e-003   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.1e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATATAGAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATAGAT   ATCTATAT          7          0   7.5e-003   4.1e+001
#         ATATAGAT   ATCTATAT          7          0   7.5e-003   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAATGAAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATGAAT   ATTCATTT          6          0   1.5e-002   8.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATAAAAAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAAAAAC   GTTTTTAT          6          0   1.5e-002   8.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TGTTTAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGTTTAAA   TTTAAACA          6          0   1.5e-002   8.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.1e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.73 seconds