# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Fer3/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Fer3.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Fer3.fasta (Sat Feb 12 15:50:50 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.358 C 0.143 G 0.139 T 0.359


MOTIF ATATGTAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATGTAC   GTACATAT          8          0   3.7e-003   2.1e+001
#         ATATGTAC   GTACATAT          8          0   3.7e-003   2.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATATTTCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATTTCA   TGAAATAT          7          0   7.5e-003   4.1e+001
#         ATATTTCA   TGAAATAT          7          0   7.5e-003   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACAAAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACAAAT   ATTTGTTT          6          0   1.5e-002   8.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 8.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF TACATACA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TACATACA   TGTATGTA          6          0   1.5e-002   8.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.3e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TATACATA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATACATA   TATGTATA          6          0   1.5e-002   8.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.3e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.22 seconds