# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Ez/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Ez.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Ez.fasta (Sat Feb 12 15:50:49 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.245 C 0.246 G 0.240 T 0.268


MOTIF GMGAGCGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GMGAGCGA   TCGCTCKC         16          0   1.2e-005   7.8e-002
#         GCGAGCGA   TCGCTCGC          9          0   1.8e-003   1.2e+001
#         GAGAGCGA   TCGCTCTC          7          0   7.5e-003   4.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 7.8e-002
0.000000 0.000000 1.000000 0.000000
0.437500 0.562500 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAATGGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATGGC   GCCATTTT          9          0   1.8e-003   1.2e+001
#         AAAATGGC   GCCATTTT          9          0   1.8e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GAAAGAGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAAGAGA   TCTCTTTC          8          0   3.7e-003   2.4e+001
#         GAAAGAGA   TCTCTTTC          8          0   3.7e-003   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.4e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAATGGT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATGGT   ACCATTTT          6          0   1.5e-002   9.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.6e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF TTTCAAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTTCAAAA   TTTTGAAA          6          0   1.5e-002   9.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.5e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.93 seconds