# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Esplm8-HLH/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Esplm8-HLH.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Esplm8-HLH.fasta (Sat Feb 12 15:50:49 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.251 C 0.237 G 0.259 T 0.253


MOTIF ACAKCTGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAKCTGC   GCAGMTGT         18          0   2.8e-006   1.8e-002
#         ACAGCTGC   GCAGCTGT         11          0   4.4e-004   2.9e+000
#         ACATCTGC   GCAGATGT          7          0   7.5e-003   4.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.8e-002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.611111 0.388889
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCACGCGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCACGCGC   GCGCGTGC          9          0   1.8e-003   1.2e+001
#         GCACGCGC   GCGCGTGC          9          0   1.8e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.2e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCACGAGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCACGAGC   GCTCGTGC          6          0   1.5e-002   9.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.7e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AACAACAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAACAG   CTGTTGTT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACACCTGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACCTGC   GCAGGTGT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.31 seconds