# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Elba2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Elba2.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Elba2.fasta (Sat Feb 12 15:50:49 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.278 C 0.214 G 0.223 T 0.285


MOTIF CAATWGGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAATWGGA   TCCWATTG         58          1   2.8e-018   1.8e-014
#         CAATTGGA   TCCAATTG         35          1   1.6e-010   1.0e-006
#         CAATAGGA   TCCTATTG         23          0   7.0e-008   4.5e-004

letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.8e-014
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.396552 0.000000 0.000000 0.603448
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAATAAGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAATAAGA   TCTTATTG         22          0   1.5e-007   9.0e-004
#         CAATAAGA   TCTTATTG         22          0   1.5e-007   9.0e-004

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 9.0e-004
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCAAYTGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAAYTGG   CCARTTGG         17          0   5.8e-006   3.5e-002
#         CCAATTGG   CCAATTGG         11          0   4.4e-004   2.6e+000
#         CCAACTGG   CCAGTTGG          7          0   7.5e-003   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.5e-002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.388889 0.000000 0.611111
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCAATAAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAATAAG   CTTATTGG          7          0   7.5e-003   4.4e+001
#         CCAATAAG   CTTATTGG          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCAATTAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAATTAG   CTAATTGG          6          0   1.5e-002   8.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.9e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 2.80 seconds