# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Ebx/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Ebx.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Ebx.fasta (Sat Feb 12 15:50:49 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n08.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.290 C 0.205 G 0.211 T 0.294


MOTIF AAGTATGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGTATGC   GCATACTT         12          1   1.5e-003   1.0e+001
#         AAGTATGC   GCATACTT         12          1   1.5e-003   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.0e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACTGCTTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTGCTTG   CAAGCAGT          9          0   1.8e-003   1.2e+001
#         ACTGCTTG   CAAGCAGT          9          0   1.8e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAATACCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATACCA   TGGTATTT         10          1   5.4e-003   3.5e+001
#         AAATACCA   TGGTATTT         10          1   5.4e-003   3.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.5e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TATCTTGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATCTTGA   TCAAGATA          7          0   7.5e-003   4.8e+001
#         TATCTTGA   TCAAGATA          7          0   7.5e-003   4.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.8e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGATGGCG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGATGGCG   CGCCATCT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.58 seconds