# DREME 5.3.3 # command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_ERR/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/ERR.fasta # positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/ERR.fasta (Sat Feb 12 15:50:49 EST 2022) # negatives: 250 from shuffled positives # host: c17n10.farnam.hpc.yale.internal # when: Sat Feb 12 15:55:12 EST 2022 MEME version 5.3.3 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.257 C 0.237 G 0.245 T 0.261 MOTIF CAAGGTCA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST CAAGGTCA TGACCTTG 14 0 5.1e-005 3.4e-001 # CAAGGTCA TGACCTTG 14 0 5.1e-005 3.4e-001 letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 3.4e-001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAATGTCA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST CAATGTCA TGACATTG 8 1 1.9e-002 1.3e+002 letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.3e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AAGGGCAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AAGGGCAA TTGCCCTT 5 0 3.1e-002 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CAAGGTCG DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CAAGGTCG CGACCTTG 5 0 3.1e-002 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CGACCTTC DREME-5 # Word RC Word Pos Neg P-value E-value # BEST CGACCTTC GAAGGTCG 5 0 3.1e-002 2.0e+002 letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 # Stopping reason: target motif count reached # Running time: 1.28 seconds