# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Dp/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Dp.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Dp.fasta (Sat Feb 12 15:50:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.276 C 0.217 G 0.217 T 0.290


MOTIF ATCGATAR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCGATAR   YTATCGAT         44          0   7.1e-015   4.4e-011
#         ATCGATAA   TTATCGAT         28          0   1.7e-009   1.0e-005
#         ATCGATAG   CTATCGAT         24          0   3.3e-008   2.1e-004

letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 4.4e-011
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.533333 0.000000 0.466667 0.000000


MOTIF GCGCCAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGCCAAA   TTTGGCGC         13          0   1.0e-004   6.2e-001
#         GCGCCAAA   TTTGGCGC         13          0   1.0e-004   6.2e-001

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 6.2e-001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGTCACAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTCACAC   GTGTGACC         10          0   8.9e-004   5.3e+000
#         GGTCACAC   GTGTGACC         10          0   8.9e-004   5.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 5.3e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATACC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATACC   GGTATTTT          9          0   1.8e-003   1.1e+001
#         AAAATACC   GGTATTTT          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.1e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGTTGCCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGTTGCCA   TGGCAACG          9          0   1.8e-003   1.0e+001
#         CGTTGCCA   TGGCAACG          9          0   1.8e-003   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.0e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.37 seconds