# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Dif/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Dif.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Dif.fasta (Sat Feb 12 15:50:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.240 C 0.261 G 0.256 T 0.243


MOTIF AAAGAGMG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGAGMG   CKCTCTTT         27          3   2.3e-006   1.4e-002
#         AAAGAGAG   CTCTCTTT         18          3   6.0e-004   3.6e+000
#         AAAGAGCG   CGCTCTTT         10          0   8.9e-004   5.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 1.4e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.642857 0.357143 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGAGMGCG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGMGCG   CGCKCTCT         21          5   9.6e-004   5.6e+000
#         AGAGAGCG   CGCTCTCT         17          5   7.3e-003   4.3e+001
#         AGAGCGCG   CGCGCTCT          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 5.6e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.761905 0.238095 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGCTTTTG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCTTTTG   CAAAAGCT          6          0   1.5e-002   8.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AACCAGTT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACCAGTT   AACTGGTT          8          1   1.9e-002   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AACCCGTT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACCCGTT   AACGGGTT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.47 seconds