# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Dfd/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Dfd.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Dfd.fasta (Sat Feb 12 15:50:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.225 C 0.268 G 0.278 T 0.228


MOTIF GCWGCAAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCWGCAAC   GTTGCWGC         72          9   1.1e-015   5.5e-012
#         GCAGCAAC   GTTGCTGC         68          9   2.1e-014   1.0e-010
#         GCTGCAAC   GTTGCAGC          8          0   3.7e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 92 E= 5.5e-012
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.923913 0.000000 0.000000 0.076087
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CARCAACA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CARCAACA   TGTTGYTG         30          5   5.8e-006   2.7e-002
#         CAGCAACA   TGTTGCTG         18          3   6.0e-004   2.8e+000
#         CAACAACA   TGTTGTTG         15          3   3.3e-003   1.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 2.7e-002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.512821 0.000000 0.487179 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACAGCAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAGCAG   CTGCTGTT         20          5   1.6e-003   7.5e+000
#         AACAGCAG   CTGCTGTT         20          5   1.6e-003   7.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 7.5e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCACGCCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCACGCCC   GGGCGTGG          9          0   1.8e-003   8.3e+000
#         CCACGCCC   GGGCGTGG          9          0   1.8e-003   8.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 8.3e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCCGCCGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCGCCGC   GCGGCGGC          7          0   7.5e-003   3.4e+001
#         GCCGCCGC   GCGGCGGC          7          0   7.5e-003   3.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.4e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 2.61 seconds