# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Dad/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Dad.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Dad.fasta (Sat Feb 12 15:50:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.288 C 0.201 G 0.222 T 0.289


MOTIF ATCGATAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCGATAG   CTATCGAT          6          0   1.5e-002   1.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.0e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAAGTGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGTGC   GCACTTTT          5          0   3.1e-002   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GGTCACAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTCACAC   GTGTGACC          5          0   3.1e-002   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAACAAT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACAAT   ATTGTTTT          4          0   6.2e-002   4.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAATACT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATACT   AGTATTTT          4          0   6.2e-002   4.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.27 seconds