# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_Crg-1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/Crg-1.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/Crg-1.fasta (Sat Feb 12 15:50:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.299 C 0.205 G 0.202 T 0.294


MOTIF AAACAAAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACAAAC   GTTTGTTT         10          0   8.9e-004   5.8e+000
#         AAACAAAC   GTTTGTTT         10          0   8.9e-004   5.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 5.8e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TATGTACA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATGTACA   TGTACATA          9          0   1.8e-003   1.2e+001
#         TATGTACA   TGTACATA          9          0   1.8e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.2e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATAAAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATAAAT   ATTTATTT          8          0   3.7e-003   2.4e+001
#         AAATAAAT   ATTTATTT          8          0   3.7e-003   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CAACACTG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAACACTG   CAGTGTTG         10          1   5.4e-003   3.5e+001
#         CAACACTG   CAGTGTTG         10          1   5.4e-003   3.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.5e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATGCAAAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGCAAAT   ATTTGCAT          7          0   7.5e-003   4.7e+001
#         ATGCAAAT   ATTTGCAT          7          0   7.5e-003   4.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.24 seconds