# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CTCF/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CTCF.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CTCF.fasta (Sat Feb 12 15:50:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:56 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.245 C 0.262 G 0.259 T 0.234


MOTIF AGRKGGCG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGRKGGCG   CGCCMYCT         95          1   2.2e-032   1.4e-028
#         AGGTGGCG   CGCCACCT         37          0   1.7e-012   1.1e-008
#         AGATGGCG   CGCCATCT         31          0   1.7e-010   1.1e-006
#         AGGGGGCG   CGCCCCCT         15          0   2.5e-005   1.6e-001
#         AGAGGGCG   CGCCCTCT         13          1   8.0e-004   5.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 1.4e-028
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.458333 0.000000 0.541667 0.000000
0.000000 0.000000 0.291667 0.708333
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACCTGGCG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCTGGCG   CGCCAGGT          7          0   7.5e-003   4.5e+001
#         ACCTGGCG   CGCCAGGT          7          0   7.5e-003   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGCAGCAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCAGCAG   CTGCTGCT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CTAGCGGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTAGCGGC   GCCGCTAG          6          1   6.1e-002   3.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.6e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAATTTTC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAATTTTC   GAAAATTG          4          0   6.2e-002   3.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.6e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.30 seconds