# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG9797/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG9797.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG9797.fasta (Sat Feb 12 15:50:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.277 C 0.215 G 0.225 T 0.284


MOTIF GGBCACAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGBCACAC   GTGTGVCC         69          1   3.0e-022   1.9e-018
#         GGTCACAC   GTGTGACC         48          1   8.1e-015   5.1e-011
#         GGCCACAC   GTGTGGCC         11          0   4.4e-004   2.8e+000
#         GGGCACAC   GTGTGCCC         10          0   8.9e-004   5.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 1.9e-018
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.159420 0.144928 0.695652
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GTATTTTD DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTATTTTD   HAAAATAC         23          0   7.0e-008   4.2e-004
#         GTATTTTT   AAAAATAC          9          0   1.8e-003   1.1e+001
#         GTATTTTA   TAAAATAC          7          0   7.5e-003   4.4e+001
#         GTATTTTG   CAAAATAC          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 4.2e-004
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.304348 0.000000 0.304348 0.391304


MOTIF AATACCAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATACCAA   TTGGTATT         12          0   2.1e-004   1.2e+000
#         AATACCAA   TTGGTATT         12          0   2.1e-004   1.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.2e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAATAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATAAA   TTTATTTT          7          0   7.5e-003   4.3e+001
#         AAAATAAA   TTTATTTT          7          0   7.5e-003   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGTATGAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTATGAC   GTCATACT          7          0   7.5e-003   4.3e+001
#         AGTATGAC   GTCATACT          7          0   7.5e-003   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.84 seconds