# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_CG9437/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG9437.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/CG9437.fasta (Sat Feb 12 15:50:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.291 C 0.206 G 0.217 T 0.286


MOTIF ACGTAASG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGTAASG   CSTTACGT         32          0   8.1e-011   5.2e-007
#         ACGTAACG   CGTTACGT         25          0   1.6e-008   1.0e-004
#         ACGTAAGG   CCTTACGT         10          0   8.9e-004   5.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 5.2e-007
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.736842 0.263158 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TAACGTAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAACGTAA   TTACGTTA         13          1   8.0e-004   5.0e+000
#         TAACGTAA   TTACGTTA         13          1   8.0e-004   5.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 5.0e+000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACGTAAGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGTAAGC   GCTTACGT          9          1   1.0e-002   6.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 6.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATACGTAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATACGTAA   TTACGTAT          6          0   1.5e-002   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAATTAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATTAT   ATAATTTT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.33 seconds